Returns a list of your samples found in the metadata file.
Arguments
- mass_data
The object generated from
ms2_ms1_compare().
Examples
data <-
import_all_data(peak_table =
mums2::mums2_example("botryllus_pt_small.csv"),
metadata =
mums2::mums2_example("boryillus_metadata.csv"),
format = "None")
matched_data <- ms2_ms1_compare(mums2_example("botryllus_v2.gnps.mgf"),
data, 1, 6)
#> Reading: /home/runner/work/_temp/Library/mums2/extdata/botryllus_v2.gnps.mgf ...
#> 17/349 peaks have an MS2 spectra.
get_samples(matched_data)
#> [1] "221012_DGM_Blank1_1_1_390" "221012_DGM_Blank1_1_2_391"
#> [3] "221012_DGM_Blank1_1_3_392" "221012_DGM_MB1588_3_1_395"
#> [5] "221012_DGM_MB1588_3_2_396" "221012_DGM_MB1588_3_3_397"
#> [7] "221012_DGM_MB1589_4_1_398" "221012_DGM_MB1589_4_2_399"
#> [9] "221012_DGM_MB1589_4_3_400" "221012_DGM_MB1590_5_1_401"
#> [11] "221012_DGM_MB1590_5_2_402" "221012_DGM_MB1590_5_3_403"
#> [13] "221012_DGM_Blank2_1_1_404" "221012_DGM_Blank2_1_2_405"
#> [15] "221012_DGM_Blank2_1_3_406" "221012_DGM_MB1591_6_1_407"
#> [17] "221012_DGM_MB1591_6_2_408" "221012_DGM_MB1591_6_3_409"
#> [19] "221012_DGM_MB1592_7_1_410" "221012_DGM_MB1592_7_2_411"
#> [21] "221012_DGM_MB1592_7_3_412" "221012_DGM_MB1593_8_1_413"
#> [23] "221012_DGM_MB1593_8_2_414" "221012_DGM_MB1593_8_3_415"
#> [25] "221012_DGM_MB1594_9_1_416" "221012_DGM_MB1594_9_2_417"
#> [27] "221012_DGM_MB1594_9_3_418" "221012_DGM_Blank3_1_1_419"
#> [29] "221012_DGM_Blank3_1_2_420" "221012_DGM_Blank3_1_3_421"
#> [31] "221012_DGM_MB1595_10_1_422" "221012_DGM_MB1595_10_2_423"
#> [33] "221012_DGM_MB1595_10_3_424" "221012_DGM_MB1597_11_1_425"
#> [35] "221012_DGM_MB1597_11_2_426" "221012_DGM_MB1597_11_3_427"
#> [37] "221012_DGM_MB1598_12_1_428" "221012_DGM_MB1598_12_2_429"
#> [39] "221012_DGM_MB1598_12_3_430" "221012_DGM_MB1599_13_1_431"
#> [41] "221012_DGM_MB1599_13_2_432" "221012_DGM_MB1599_13_3_433"
#> [43] "221012_DGM_Blank4_1_1_434" "221012_DGM_Blank4_1_2_435"
#> [45] "221012_DGM_Blank4_1_3_436"