mums2 is a package that was created to supply researchers with a collection of tools that they can use to analyze untargeted metabolomics data. This package will supply tools to analysis tandem Mass spectrometry (MS) data in a easy and efficient manner. The package supports importation and filtration of MS1 feature tables, annotations, de novo molecular formula predictions, scoring of MS2 spectra, clustering, alpha and beta diversity calculations, and community distance calculations.
Installation
You can install the CRAN version with:
install.packages("mums2")You can install the development version of mpactr from GitHub with:
devtools::install_github("mums2/mums2")Get started
See the Getting Started page to get started.
Getting help
If you encounter an issue, please file an issue on GitHub. Please include a minimal reproducible example with your issue.
Contributing
Is there a feature you’d like to see included, please let us know! Pull requests are welcome on GitHub.