Filter Group Parameters — filter_group_params • mums2

Creates a list of filter group arguments for the filter_peak_table() function

Usage

filter_group_params(
  group_threshold = 0.01,
  group_to_remove,
  remove_ions = TRUE,
  copy_object = FALSE
)

Arguments

group_threshold: Relative abundance threshold at which to remove ions. Default = 0.01.
group_to_remove: Biological group name to remove ions from.
remove_ions: A boolean parameter. If TRUE failing ions will be removed from the peak table. Default = TRUE.
copy_object: A boolean parameter that allows users to return a copied object instead of modifying the object.

Value

a list object of arguments needed to call the given mpactr function when supplied to the filter_peak_table() wrapper function.

Examples

filter_group_params(group_to_remove = "blank")
#> $group_threshold
#> [1] 0.01
#> 
#> $group_to_remove
#> [1] "blank"
#> 
#> $remove_ions
#> [1] TRUE
#> 
#> $copy_object
#> [1] FALSE
#> 
#> attr(,"class")
#> [1] "filter_group"